Stem-loop ptc-MIR482a

Accession

MI0002397

Description

Populus trichocarpa ptc-MIR482a precursor miRNA

Gene family

MIPF0000403; MIR482

Literature search

8 open access papers mention ptc-MIR482a
(142 sentences)

Sequence

gaguccuagcaagucuuuggagaugggagaguaugcaagaaggaaaaauucaugauuuaauauuccuUCUUGCCUACUCCUCCCAUUCCaucugcuuucugcgacuc
(((((.(((.((((...(((((.((((((((((.((((((((((((((((...)))))....))))))))))).)))).)))))))))))...)))).))).)))))

Structure

     c   c    cuu     a      -    u           ----     c 
gaguc uag aagu   uggag ugggag agua gcaagaaggaa    aaauu  
||||| ||| ||||   ||||| |||||| |||| |||||||||||    ||||| a
cucag guc uucg   aCCUU ACCCUC UCAU CGUUCUuccuu    uuuag  
     c   u    ucu     -      C    C           auaa     u 

Annotation confidence Not enough data

Genome context

CM000344.2: 8028049-8028155 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ptc-MIR482a

Mature ptc-miR482a.2

• Accession: MIMAT0006785
• Description: Populus trichocarpa ptc-miR482a.2 mature miRNA
• Sequence: 68 - UCUUGCCUACUCCUCCCAUU - 87
• Evidence: experimental ; cloned [2]

Mature ptc-miR482a.1

• Accession: MIMAT0002103
• Description: Populus trichocarpa ptc-miR482a.1 mature miRNA
• Sequence: 73 - CCUACUCCUCCCAUUCC - 89
• Evidence: experimental ; cloned [1], PCR [1]

References

1. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203


2. PubMed ID: 18363789
   Stress-responsive microRNAs in Populus
   "Lu S, Sun YH, Chiang VL"
   "Plant J (2008) 55:131-151