Stem-loop sequence mmu-mir-470

Accession

MI0002405 (change log)

Symbol

MGI:Mir470

Description

Mus musculus miR-470 stem-loop

Gene family

MIPF0000386; mir-743

Literature search

11 open access papers mention mmu-mir-470
(20 sentences)

Stem-loop

   ----cag         ug  cu  c      -ga   aa 
5'        ugcucuucu  ga  gg acuggu   guu  a
          |||||||||  ||  || ||||||   |||   
3'        augagaaga  cu  cc ugacca   uaa  c
   acucgaa         gu  uu  a      aca   au 

Deep sequencing

236583 reads, 2e+03 reads per million, 52 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3].

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chrX: 66813951-66814025 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-470

• mmu-mir-465d: chrX: 66822656-66822713 [-]
• mmu-mir-470: chrX: 66813951-66814025 [-]
• mmu-mir-871: chrX: 66810428-66810504 [-]

Database links

• EntrezGene:Mir470
• MGI:Mir470
• RNAcentral:URS000075E725_10090
• miRBase Tracker:MI0002405

Mature sequence mmu-miR-470-5p

• Accession: MIMAT0002111
• Previous IDs: mmu-miR-470
• Sequence: 9 - uucuuggacuggcacuggugagu - 31
• Deep sequencing: 235203 reads, 52 experiments
• Evidence: experimental; cloned [1-3], Illumina [4-5]
• Database links:
  • RNAcentral:URS000061D3E1_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-470-5p
  • miRDB:mmu-miR-470-5p
  • microrna.org:mmu-miR-470-5p

Mature sequence mmu-miR-470-3p

• Accession: MIMAT0004760
• Previous IDs: mmu-miR-470*
• Sequence: 44 - aaccaguaccuuucugagaaga - 65
• Deep sequencing: 1377 reads, 24 experiments
• Evidence: experimental; cloned [3], Illumina [4-5]
• Database links:
  • RNAcentral:URS000016742D_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-470-3p
  • miRDB:mmu-miR-470-3p
  • microrna.org:mmu-miR-470-3p

References

1. PMID:15901636 "MicroRNA Mirn122a reduces expression of the posttranscriptionally regulated germ cell transition protein 2 (Tnp2) messenger RNA (mRNA) by mRNA cleavage" Yu Z, Raabe T, Hecht NB Biol Reprod. 73:427-433(2005).
2. PMID:16766679 "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
5. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).