Stem-loop ssc-mir-301

Accession

MI0002432

Description

Sus scrofa ssc-mir-301 precursor miRNA

Literature search

4 open access papers mention ssc-mir-301
(6 sentences)

Sequence

7155 reads, 7.0 reads per million, 186 experiments

gcuaacaaauGCUCUGACUUUAUUGCACUACUguacuuuacagcuacCAGUCCAAUAGUAUUGUCAAAGCaucugagagcag
(((..((.(((((.((((..(((((....((((((((....)).)).))))....)))))..)))).))))).))..)))..

Structure

--   aa  a     C    UU     CACU    -  -  u 
  gcu  ca auGCU UGAC  UAUUG    ACUg ua cu u
  |||  || ||||| ||||  |||||    |||| || ||  
  cga  gu uaCGA ACUG  AUGAU    UGAC au ga a
ga   ga  c     A    UU     AACC    c  c  c 

Annotation confidence Medium

Genome context

Unknown

Mature ssc-miR-301-5p

• Accession: MIMAT0052562
• Description: Sus scrofa ssc-miR-301-5p mature miRNA
• Sequence: 11 - GCUCUGACUUUAUUGCACUACU - 32
• Evidence: not_experimental

Mature ssc-miR-301-3p

• Accession: MIMAT0002138
• Description: Sus scrofa ssc-miR-301-3p mature miRNA
• Sequence: 48 - CAGUCCAAUAGUAUUGUCAAAGC - 70
• Evidence: not_experimental

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70