Stem-loop ssc-mir-196a-2

Accession

MI0002457

Description

Sus scrofa ssc-mir-196a-2 precursor miRNA

Literature search

16 open access papers mention ssc-mir-196a-2
(103 sentences)

Sequence

338719 reads, 157.0 reads per million, 142 experiments

uugcucagcugaucuguggcuUAGGUAGUUUCAUGUUGUUGGGauugaguuuugaacUCGGCAACAAGAAACUGCCUGAGuuacaucagucgguuaucgucgagggc
..(((((((((((.((((((((((((((((((.((((((((((.((........)))))))))))).))))))))))))))))))...)))))))........))))

Structure

uu    --------       --c                  A          a  gag 
  gcuc        agcugau   uguggcuUAGGUAGUUUC UGUUGUUGGG uu   u
  ||||        |||||||   |||||||||||||||||| |||||||||| ||    
  cggg        uuggcug   acauuGAGUCCGUCAAAG ACAACGGCUc aa   u
--    agcugcua       acu                  A          -  guu 

Annotation confidence High

Genome context

chr5: 19654956-19655062 [-]

Mature ssc-miR-196a-5p

• Accession: MIMAT0002163
• Description: Sus scrofa ssc-miR-196a-5p mature miRNA
• Sequence: 22 - UAGGUAGUUUCAUGUUGUUGGG - 43
• Evidence: experimental ; Illumina [1]

Mature ssc-miR-196a-2-3p

• Accession: MIMAT0052583
• Description: Sus scrofa ssc-miR-196a-2-3p mature miRNA
• Sequence: 58 - UCGGCAACAAGAAACUGCCUGAG - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 15885146
   Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing
   "Wernersson R, Schierup MH, Jorgensen FG, Gorodkin J, Panitz F, Staerfeldt HH, Christensen OF, Mailund T, Hornshoj H, Klein A, Wang J, Liu B, Hu S, Dong W, Li W, Wong GK, Yu J, Wang J, Bendixen C, Fredholm M, Brunak S, Yang H, Bolund L"
   "BMC Genomics (2005) 6:70


2. PubMed ID: 19917043
   MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing
   "Nielsen M, Hansen JH, Hedegaard J, Nielsen RO, Panitz F, Bendixen C, Thomsen B"
   "Anim Genet (2010) 41:159-168