Stem-loop sequence hsa-mir-485

Accession

MI0002469

Symbol

HGNC:MIR485

Description

Homo sapiens miR-485 stem-loop

Gene family

MIPF0000201; mir-485

Stem-loop

   ug        cu       -    a    auuc 
acu  gagagagg  ggccgug auga uucg    a
|||  ||||||||  ||||||| |||| ||||    u
uga  uucucucc  ucggcac uacu gagc    c
   uu        uc       a    -    gaaa 

Deep sequencing

1343 reads, 12 experiments

Genome context

• Coordinates (GRCh37.p5): chr14: 101521756-101521828 [+]
• Overlapping transcripts:

  sense

  ENST00000385292 ; MIR485-201; exon 1

Clustered miRNAs

< 10kb from hsa-mir-485

• hsa-mir-381: chr14: 101512257-101512331 [+]
• hsa-mir-487b: chr14: 101512792-101512875 [+]
• hsa-mir-539: chr14: 101513658-101513735 [+]
• hsa-mir-889: chr14: 101514238-101514316 [+]
• hsa-mir-544a: chr14: 101514995-101515085 [+]
• hsa-mir-655: chr14: 101515887-101515983 [+]
• hsa-mir-487a: chr14: 101518783-101518862 [+]
• hsa-mir-382: chr14: 101520643-101520718 [+]
• hsa-mir-134: chr14: 101521024-101521096 [+]
• hsa-mir-668: chr14: 101521595-101521660 [+]
• hsa-mir-485: chr14: 101521756-101521828 [+]
• hsa-mir-323b: chr14: 101522556-101522637 [+]
• hsa-mir-154: chr14: 101526092-101526175 [+]
• hsa-mir-496: chr14: 101526910-101527011 [+]
• hsa-mir-377: chr14: 101528387-101528455 [+]
• hsa-mir-541: chr14: 101530832-101530915 [+]
• hsa-mir-409: chr14: 101531637-101531715 [+]

Database links

• EMBL: AY882307;AY882307
• EMBL: AY882335;AY882335
• ENTREZGENE: 574436;MIR485
• HGNC: 32067;MIR485

Mature sequence hsa-miR-485-5p

• Accession: MIMAT0002175
• Sequence: 9 - agaggcuggccgugaugaauuc - 30
• Deep sequencing: 702 reads, 11 experiments
• Evidence: experimental; array-cloned [2], cloned [3]
• Validated targets:
  • TARBASE:hsa-miR-485-5p
• Predicted targets:
  • DIANA-MICROT:hsa-miR-485-5p
  • MICRORNA.ORG:hsa-miR-485-5p
  • MIRDB:hsa-miR-485-5p
  • RNA22-HSA:hsa-miR-485-5p
  • TARGETMINER:hsa-miR-485-5p
  • TARGETSCAN-VERT:hsa-miR-485-5p

Mature sequence hsa-miR-485-3p

• Accession: MIMAT0002176
• Sequence: 46 - gucauacacggcucuccucucu - 67
• Deep sequencing: 641 reads, 3 experiments
• Evidence: experimental; cloned [1,3], array-cloned [2]
• Validated targets:
  • MIRECORDS:hsa-miR-485-3p
  • MIRTARBASE:hsa-miR-485-3p
  • TARBASE:hsa-miR-485-3p
• Predicted targets:
  • DIANA-MICROT:hsa-miR-485-3p
  • MICRORNA.ORG:hsa-miR-485-3p
  • MIRDB:hsa-miR-485-3p
  • RNA22-HSA:hsa-miR-485-3p
  • TARGETMINER:hsa-miR-485-3p
  • TARGETSCAN-VERT:hsa-miR-485-3p

References

1. PMID:15978578 "Identification of human fetal liver miRNAs by a novel method" Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X FEBS Lett. 579:3849-3854(2005).
2. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).