miRBase entry: mml-mir-200c

Stem-loop mml-mir-200c


Accession
MI0002484
Description
Macaca mulatta mml-mir-200c precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
2 open access papers mention mml-mir-200c
(2 sentences)

Sequence

62214 reads, 458 reads per million, 9 experiments
cccuCGUCUUACCCAGCAGUGUUUGGgugcgguugggagucucuAAUACUGCCGGGUAAUGAUGGAgg
.(((((((((((((.((((((((.(((.((........))))).)))))))).)))))).))).))))

Structure
c    -   -      A        U   u  ggu 
 ccuC GUC UUACCC GCAGUGUU GGg gc   u
 |||| ||| |||||| |||||||| ||| ||    
 ggAG UAG AAUGGG CGUCAUAA cuc ug   g
-    G   U      C        u   -  agg 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr11: 7280477-7280544 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mml-mir-200c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-200c-3p

Accession MIMAT0002195
Description Macaca mulatta mml-miR-200c-3p mature miRNA
Sequence 45 - AAUACUGCCGGGUAAUGAUGGA - 66
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mml-miR-200c-5p

Accession MIMAT0026560
Description Macaca mulatta mml-miR-200c-5p mature miRNA
Sequence 5 - CGUCUUACCCAGCAGUGUUUGG - 26
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45