miRBase entry: ppy-mir-200c

Stem-loop ppy-mir-200c


Accession
MI0002488
Description
Pongo pygmaeus ppy-mir-200c precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

cccucgucuuacccagcaguguuugggugcgguugggagucucuAAUACUGCCGGGUAAUGAUGGAgg
.(((((((((((((.((((((((.(((.((........))))).)))))))).)))))).))).))))

Structure
c    -   -      a        u   u  ggu 
 ccuc guc uuaccc gcaguguu ggg gc   u
 |||| ||| |||||| |||||||| ||| ||    
 ggAG UAG AAUGGG CGUCAUAA cuc ug   g
-    G   U      C        u   -  agg 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr12: 7199699-7199766 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppy-mir-200c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-200c

Accession MIMAT0002199
Description Pongo pygmaeus ppy-miR-200c mature miRNA
Sequence 45 - AAUACUGCCGGGUAAUGAUGGA - 66
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24