miRBase entry: ptr-mir-15b

Stem-loop ptr-mir-15b


Accession
MI0002495
Description
Pan troglodytes ptr-mir-15b precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
1 open access papers mention ptr-mir-15b
(1 sentences)

Sequence

uugaggccuuaaaguacugUAGCAGCACAUCAUGGUUUACAugcuacagucaagaugcgaaucauuauuugcugcucuagaaauuuaaggaaauucau
.((((.(((((((...(((.(((((((.((.(((((((.(((.((.......))))).))))))).)).))))))).)))...)))))))...)))).

Structure
u    --g       gua   U       C  C       A   g  ac 
 ugag   ccuuaaa   cug AGCAGCA AU AUGGUUU CAu cu  a
 ||||   |||||||   ||| ||||||| || ||||||| ||| ||  g
 acuu   ggaauuu   gau ucgucgu ua uacuaag gua ga  u
u    aaa       aaa   c       u  u       c   -  ac 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr3: 164010544-164010641 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-15b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-15b

Accession MIMAT0002206
Description Pan troglodytes ptr-miR-15b mature miRNA
Sequence 20 - UAGCAGCACAUCAUGGUUUACA - 41
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24