miRBase entry: ppy-mir-128-1

Stem-loop ppy-mir-128-1


Accession
MI0002520
Description
Pongo pygmaeus ppy-mir-128-1 precursor miRNA
Gene family
MIPF0000048; mir-128


Sequence

ugagcuguuggauucggggccguagcacugucugagagguuuacauuucUCACAGUGAACCGGUCUCUUUuucagcugcuuc
.((((.((((((...(((((((...((((((..(((((((....)))))))))))))...)))))))...)))))).)))).

Structure
u    u      uuc       uag      cu       u 
 gagc guugga   ggggccg   cacugu  gagaggu u
 |||| ||||||   |||||||   ||||||  |||||||  
 uucg cgacuu   CUCUGGC   GUGACA  CUcuuua a
c    u      UUU       CAA      --       c 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr2B: 24605741-24605822 [+]

Database links

Mature ppy-miR-128

Accession MIMAT0002231
Description Pongo pygmaeus ppy-miR-128 mature miRNA
Sequence 50 - UCACAGUGAACCGGUCUCUUU - 70
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24