miRBase entry: ptr-mir-133a-1

Stem-loop ptr-mir-133a-1


Accession
MI0002532
Description
Pan troglodytes ptr-mir-133a-1 precursor miRNA
Gene family
MIPF0000029; mir-133


Sequence

acaaugcuuugcuagagcugguaaaauggaaccaaaucgccucuucaauggaUUUGGUCCCCUUCAACCAGCUGuagcuaugcauuga
.((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))).

Structure
a      uuu    g       aa  u  a        gccuc 
 caaugc   gcua agcuggu  aa gg accaaauc     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgau UCGACCA  UU CC UGGUUUag     u
a      uau    G       AC  C  C        guaac 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr18: 18838061-18838148 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-133a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-133a

Accession MIMAT0002243
Description Pan troglodytes ptr-miR-133a mature miRNA
Sequence 53 - UUUGGUCCCCUUCAACCAGCUG - 74
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24