miRBase entry: ptr-mir-140

Stem-loop ptr-mir-140


Accession
MI0002547
Description
Pan troglodytes ptr-mir-140 precursor miRNA
Gene family
MIPF0000085; mir-140


Sequence

ugugucucucucuguguccugccAGUGGUUUUACCCUAUGGUAGguuacgucaugcuguucuaccacaggguagaaccacggacaggauaccggggcacc
.(((((((.....((((((((((.(((((((((((((.(((((((.((.((...)))).))))))).))))))))))))))).)))))))).))))))).

Structure
u       ucucu        -  A             A       u  c  c 
 gugucuc     guguccug cc GUGGUUUUACCCU UGGUAGg ua gu  
 |||||||     |||||||| || ||||||||||||| ||||||| || || a
 cacgggg     cauaggac gg caccaagauggga accaucu gu cg  
c       ----c        a  -             c       u  -  u 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr16: 60894808-60894907 [+]

Database links

Mature ptr-miR-140

Accession MIMAT0002255
Description Pan troglodytes ptr-miR-140 mature miRNA
Sequence 24 - AGUGGUUUUACCCUAUGGUAG - 44
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24