miRBase entry: ppy-mir-145

Stem-loop ppy-mir-145


Accession
MI0002561
Description
Pongo pygmaeus ppy-mir-145 precursor miRNA
Gene family
MIPF0000079; mir-145


Sequence

caccuuguccucacgGUCCAGUUUUCCCAGGAAUCCCUUagaugcuaagauggggauuccuggaaauacuguucuugaggucaugguu
.(((.((.(((((.((..((((.((.((((((((((((.............)))))))))))).)).))))..))))))).)).))).

Structure
c   u  u     c  UC    U  C            Uagau 
 acc ug ccuca gG  CAGU UU CCAGGAAUCCCU     g
 ||| || ||||| ||  |||| || ||||||||||||     c
 ugg ac ggagu uc  guca aa gguccuuagggg     u
u   u  u     -  uu    u  a            uagaa 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr5: 151352993-151353080 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppy-mir-145
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-145

Accession MIMAT0002269
Description Pongo pygmaeus ppy-miR-145 mature miRNA
Sequence 16 - GUCCAGUUUUCCCAGGAAUCCCUU - 39
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24