miRBase entry: ptr-mir-9-2

Stem-loop ptr-mir-9-2


Accession
MI0002569
Description
Pan troglodytes ptr-mir-9-2 precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
1 open access papers mention ptr-mir-9-2
(1 sentences)

Sequence

ggaagcgaguuguuaUCUUUGGUUAUCUAGCUGUAUGAguguauuggucuucauaaagcuagauaaccgaaaguaaaaacuccuuca
.((((.(((((.((((.(((((((((((((((.((((((.(.......))))))).))))))))))))))).)))).))))))))).

Structure
g    c     g    C               G      u ua 
 gaag gaguu uuaU UUUGGUUAUCUAGCU UAUGAg g  u
 |||| ||||| |||| ||||||||||||||| |||||| |  u
 cuuc cucaa aaug aagccaauagaucga auacuu c  g
a    -     a    a               a      - ug 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr5: 26977880-26977966 [+]

Database links

Mature ptr-miR-9

Accession MIMAT0002275
Description Pan troglodytes ptr-miR-9 mature miRNA
Sequence 16 - UCUUUGGUUAUCUAGCUGUAUGA - 38
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24