miRBase entry: ptr-mir-154

Stem-loop ptr-mir-154


Accession
MI0002597
Description
Pan troglodytes ptr-mir-154 precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
1 open access papers mention ptr-mir-154
(1 sentences)

Sequence

gugguacuugaagaUAGGUUAUCCGUGUUGCCUUCGcuuuauuugugacgaaucauacacgguugaccuauuuuucaguaccaa
.(((((((.((((((((((((.((((((((.(.((((.......)))).)...)).)))))).)))))))))))).))))))).

Structure
g       u            U      -  --C U    uu 
 ugguacu gaagaUAGGUUA CCGUGU UG   C UCGc  u
 ||||||| |||||||||||| |||||| ||   | ||||  a
 accauga uuuuuauccagu ggcaca ac   g agug  u
a       c            u      u  uaa c    uu 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr14: 86308003-86308086 [+]
Clustered miRNAs
13 other miRNAs are < 10 kb from ptr-mir-154
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-154

Accession MIMAT0002296
Description Pan troglodytes ptr-miR-154 mature miRNA
Sequence 15 - UAGGUUAUCCGUGUUGCCUUCG - 36
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24