miRBase entry: ptr-mir-188

Stem-loop ptr-mir-188


Accession
MI0002609
Description
Pan troglodytes ptr-mir-188 precursor miRNA
Gene family
MIPF0000113; mir-188


Sequence

ugcucccucucucaCAUCCCUUGCAUGGUGGAGGGUgaacuuucugaaaaccccucccacaugcaggguuugcaggauggcgagcc
.((((((..(((..((..(((((((((..((((((................))))))..)))))))))..))..))).)).)))).

Structure
u    -  uc   ca  UC         GU      Ugaacuu 
 gcuc cc  ucu  CA  CCUUGCAUG  GGAGGG       u
 |||| ||  |||  ||  |||||||||  ||||||        
 cgag gg  agg  gu  gggacguac  ccuccc       c
c    c  -u   ac  uu         ac      caaaagu 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chrX: 49888250-49888335 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from ptr-mir-188
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-188

Accession MIMAT0002308
Description Pan troglodytes ptr-miR-188 mature miRNA
Sequence 15 - CAUCCCUUGCAUGGUGGAGGGU - 36
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24