miRBase entry: ptr-mir-190a

Stem-loop ptr-mir-190a


Accession
MI0002614
Description
Pan troglodytes ptr-mir-190a precursor miRNA
Gene family
MIPF0000076; mir-190


Sequence

ugcaggccucugugUGAUAUGUUUGAUAUAUUAGGUuguuauuuaauccaacuauauaucaaacauauuccuacagugucuugcc
.(((((.(.(((((.((((((((((((((((..(((((..........)))))))))))))))))))))..))))).).))))).

Structure
u     c u     -U                UA     uuau 
 gcagg c cugug  GAUAUGUUUGAUAUAU  GGUug    u
 ||||| | |||||  ||||||||||||||||  |||||     
 cguuc g gacau  uuauacaaacuauaua  ucaac    u
c     u u     cc                --     cuaa 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr15: 43647788-43647872 [+]

Database links

Mature ptr-miR-190a

Accession MIMAT0002313
Description Pan troglodytes ptr-miR-190a mature miRNA
Sequence 15 - UGAUAUGUUUGAUAUAUUAGGU - 36
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24