miRBase entry: ptr-mir-21

Stem-loop ptr-mir-21


Accession
MI0002622
Description
Pan troglodytes ptr-mir-21 precursor miRNA
Gene family
MIPF0000060; mir-21

Literature search
1 open access papers mention ptr-mir-21
(2 sentences)

Sequence

ugucgggUAGCUUAUCAGACUGAUGUUGAcuguugaaucucauggcaacaccagucgaugggcugucugaca
((((((((((((((((.(((((.(((((.((((.((...))))))))))).)))))))))))))))))))))

Structure
                A     A     A    u  a 
ugucgggUAGCUUAUC GACUG UGUUG cugu ga  
|||||||||||||||| ||||| ||||| |||| || u
acagucugucggguag cugac acaac ggua cu  
                -     c     -    -  c 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr17: 59181943-59182014 [+]

Database links

Mature ptr-miR-21

Accession MIMAT0002321
Description Pan troglodytes ptr-miR-21 mature miRNA
Sequence 8 - UAGCUUAUCAGACUGAUGUUGA - 29
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24