miRBase entry: ppa-mir-24-1

Stem-loop ppa-mir-24-1


Accession
MI0002640
Description
Pan paniscus ppa-mir-24-1 precursor miRNA
Gene family
MIPF0000041; mir-24


Sequence

cuccgGUGCCUACUGAGCUGAUAUCAGUucucauuuuacacacUGGCUCAGUUCAGCAGGAACAGgag
((((.((.(((.(((((((((..(((((.............))))).))))))))).))).)).))))

Structure
    g  G   A         UA     ucuca 
cucc GU CCU CUGAGCUGA  UCAGU     u
|||| || ||| |||||||||  |||||     u
gagG CA GGA GACUUGACU  GGUca     u
    A  A   C         -C     cacau 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr9: 94314373-94314440 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppa-mir-24-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppa-miR-24-5p

Accession MIMAT0002342
Description Pan paniscus ppa-miR-24-5p mature miRNA
Sequence 6 - GUGCCUACUGAGCUGAUAUCAGU - 28
Evidence not_experimental

Mature ppa-miR-24-3p

Accession MIMAT0002343
Description Pan paniscus ppa-miR-24-3p mature miRNA
Sequence 44 - UGGCUCAGUUCAGCAGGAACAG - 65
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24