miRBase entry: ptr-mir-26a-1

Stem-loop ptr-mir-26a-1


Accession
MI0002641
Description
Pan troglodytes ptr-mir-26a-1 precursor miRNA
Gene family
MIPF0000043; mir-26


Sequence

guggccucgUUCAAGUAAUCCAGGAUAGGCUgugcaggucccaaugggccuauucuugguuacuugcacggggacgc
(((.((((((.(((((((((.((((((((((...............)))))))))).))))))))).)))))).)))

Structure
   g      U         C          gugcag 
gug ccucgU CAAGUAAUC AGGAUAGGCU      g
||| |||||| ||||||||| ||||||||||      u
cgc ggggca guucauugg ucuuauccgg      c
   a      c         u          guaacc 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr3: 38717680-38717756 [+]

Database links

Mature ptr-miR-26a

Accession MIMAT0002344
Description Pan troglodytes ptr-miR-26a mature miRNA
Sequence 10 - UUCAAGUAAUCCAGGAUAGGCU - 31
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24