Stem-loop mml-mir-28

Accession

MI0002649

Description

Macaca mulatta mml-mir-28 precursor miRNA

Gene family

MIPF0000057; mir-28

Literature search

1 open access papers mention mml-mir-28
(1 sentences)

Sequence

107011 reads, 847 reads per million, 9 experiments

gguccuugcccucAAGGAGCUCACAGUCUAUUGAGuuuccuuugugacuuuccCACUAGAUUGUGAGCUCCUGGAgggcaggcacu
(((.(((((((((.((((((((((((((((.((((((........))))....)).)))))))))))))))).))))))))).)))

Structure

   c         A                U  ----    ucc 
ggu cuugcccuc AGGAGCUCACAGUCUA UG    AGuu   u
||| ||||||||| |||||||||||||||| ||    ||||    
uca ggacgggAG UCCUCGAGUGUUAGAU AC    ucag   u
   c         G                C  ccuu    ugu 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr2: 190962046-190962131 [-]

Mature mml-miR-28-5p

• Accession: MIMAT0002352
• Description: Macaca mulatta mml-miR-28-5p mature miRNA
• Sequence: 14 - AAGGAGCUCACAGUCUAUUGAG - 35
• Evidence: experimental ; Illumina [2]

Mature mml-miR-28-3p

• Accession: MIMAT0026575
• Description: Macaca mulatta mml-miR-28-3p mature miRNA
• Sequence: 54 - CACUAGAUUGUGAGCUCCUGGA - 75
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45