miRBase entry: ptr-mir-28

Stem-loop ptr-mir-28


Accession
MI0002650
Description
Pan troglodytes ptr-mir-28 precursor miRNA
Gene family
MIPF0000057; mir-28


Sequence

gguccuugcccucAAGGAGCUCACAGUCUAUUGAGuuaccuuucugacuuucccacuagauugugagcuccuggagggcaggcacu
(((.(((((((((.((((((((((((((((.(((((((......)))))....)).)))))))))))))))).))))))))).)))

Structure
   c         A                U  ----     cc 
ggu cuugcccuc AGGAGCUCACAGUCUA UG    AGuua  u
||| ||||||||| |||||||||||||||| ||    |||||   
uca ggacgggag uccucgaguguuagau ac    ucagu  u
   c         g                c  ccuu     cu 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr3: 192841648-192841733 [+]

Database links

Mature ptr-miR-28

Accession MIMAT0002353
Description Pan troglodytes ptr-miR-28 mature miRNA
Sequence 14 - AAGGAGCUCACAGUCUAUUGAG - 35
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24