miRBase entry: ptr-mir-29a

Stem-loop ptr-mir-29a


Accession
MI0002661
Description
Pan troglodytes ptr-mir-29a precursor miRNA
Gene family
MIPF0000009; mir-29


Sequence

augacugauuucuuuugguguucagagucaauauaauuuuCUAGCACCAUCUGAAAUCGGUUau
((((((((((((...(((((((.((((...........)))))))))))...))))))))))))

Structure
            uuu       c    ucaa 
augacugauuuc   ugguguu agag    u
||||||||||||   ||||||| ||||    a
uaUUGGCUAAAG   ACCACGA UCuu    u
            UCU       -    uuaa 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr7: 135424388-135424451 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-29a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-29a

Accession MIMAT0002364
Description Pan troglodytes ptr-miR-29a mature miRNA
Sequence 41 - CUAGCACCAUCUGAAAUCGGUU - 62
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24