miRBase entry: ptr-mir-30a

Stem-loop ptr-mir-30a


Accession
MI0002667
Description
Pan troglodytes ptr-mir-30a precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
1 open access papers mention ptr-mir-30a
(1 sentences)

Sequence

gcgacUGUAAACAUCCUCGACUGGAAGcugugaagccacagaugggCUUUCAGUCGGAUGUUUGCAGCugc
(((.((((((((((((..((((((((((((((....))).....))))))))))))))))))))))).)))

Structure
   a            UC           -----   a 
gcg cUGUAAACAUCC  GACUGGAAGcu     gug a
||| ||||||||||||  |||||||||||     |||  
cgu GACGUUUGUAGG  CUGACUUUCgg     cac g
   C            --           guaga   c 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr6: 74057306-74057376 [-]

Database links

Mature ptr-miR-30a-5p

Accession MIMAT0002371
Description Pan troglodytes ptr-miR-30a-5p mature miRNA
Sequence 6 - UGUAAACAUCCUCGACUGGAAG - 27
Evidence not_experimental

Mature ptr-miR-30a-3p

Accession MIMAT0002372
Description Pan troglodytes ptr-miR-30a-3p mature miRNA
Sequence 47 - CUUUCAGUCGGAUGUUUGCAGC - 68
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24