Stem-loop ppy-mir-30a

Accession

MI0002669

Description

Pongo pygmaeus ppy-mir-30a precursor miRNA

Gene family

MIPF0000005; mir-30

Sequence

gcgacUGUAAACAUCCUCGACUGGAAGcugugaagccacagaugggCUUUCAGUCGGAUGUUUGCAGCugc
(((.((((((((((((..((((((((((((((....))).....))))))))))))))))))))))).)))

Structure

   a            UC           -----   a 
gcg cUGUAAACAUCC  GACUGGAAGcu     gug a
||| ||||||||||||  |||||||||||     |||  
cgu GACGUUUGUAGG  CUGACUUUCgg     cac g
   C            --           guaga   c 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr6: 71836911-71836981 [-]

Mature ppy-miR-30a-5p

• Accession: MIMAT0002375
• Description: Pongo pygmaeus ppy-miR-30a-5p mature miRNA
• Sequence: 6 - UGUAAACAUCCUCGACUGGAAG - 27
• Evidence: not_experimental

Mature ppy-miR-30a-3p

• Accession: MIMAT0002376
• Description: Pongo pygmaeus ppy-miR-30a-3p mature miRNA
• Sequence: 47 - CUUUCAGUCGGAUGUUUGCAGC - 68
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24