miRBase entry: ptr-mir-31

Stem-loop ptr-mir-31


Accession
MI0002672
Description
Pan troglodytes ptr-mir-31 precursor miRNA
Gene family
MIPF0000064; mir-31


Sequence

ggagaggaGGCAAGAUGCUGGCAUAGCUGuugaacugggaaccugcuaugccaacauauugccaucuuucc
(((((((.(((((.(((.(((((((((.(((........)))..))))))))).))).))))).)))))))

Structure
       a     G   C         -U   gaa 
ggagagg GGCAA AUG UGGCAUAGC  Guu   c
||||||| ||||| ||| |||||||||  |||    
ccuuucu ccguu uac accguaucg  caa   u
       a     a   a         uc   ggg 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr9: 22036238-22036308 [-]

Database links

Mature ptr-miR-31

Accession MIMAT0002380
Description Pan troglodytes ptr-miR-31 mature miRNA
Sequence 9 - GGCAAGAUGCUGGCAUAGCUG - 29
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24