Stem-loop ppa-mir-31

Accession

MI0002676

Description

Pan paniscus ppa-mir-31 precursor miRNA

Gene family

MIPF0000064; mir-31

Sequence

ggagaggaGGCAAGAUGCUGGCAUAGCUGuugaacugggaaccugcuaugccaacauauugccaucuuucc
(((((((.(((((.(((.(((((((((.(((........)))..))))))))).))).))))).)))))))

Structure

       a     G   C         -U   gaa 
ggagagg GGCAA AUG UGGCAUAGC  Guu   c
||||||| ||||| ||| |||||||||  |||    
ccuuucu ccguu uac accguaucg  caa   u
       a     a   a         uc   ggg 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr9: 21990168-21990238 [-]

Mature ppa-miR-31

• Accession: MIMAT0002384
• Description: Pan paniscus ppa-miR-31 mature miRNA
• Sequence: 9 - GGCAAGAUGCUGGCAUAGCUG - 29
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24