miRBase entry: ptr-mir-33a

Stem-loop ptr-mir-33a


Accession
MI0002685
Description
Pan troglodytes ptr-mir-33a precursor miRNA
Gene family
MIPF0000070; mir-33


Sequence

cugugGUGCAUUGUAGUUGCAUUGcauguucuggugguacccaugcaauguuuccacagugcaucacag
((((((((((((((.(..((((((((((....(((...)))))))))))))..).))))))))))))))

Structure
              A UU          uucu   g 
cugugGUGCAUUGU G  GCAUUGcaug    ggu  
|||||||||||||| |  ||||||||||    ||| g
gacacuacgugaca c  uguaacguac    cca  
              c uu          ----   u 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr22: 28560707-28560775 [+]

Database links

Mature ptr-miR-33a

Accession MIMAT0002393
Description Pan troglodytes ptr-miR-33a mature miRNA
Sequence 6 - GUGCAUUGUAGUUGCAUUG - 24
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24