Stem-loop mml-mir-98

Accession

MI0002696

Description

Macaca mulatta mml-mir-98 precursor miRNA

Literature search

7 open access papers mention mml-mir-98
(16 sentences)

Sequence

730768 reads, 641.0 reads per million, 140 experiments

gUGAGGUAGUAAGUUGUAUUGUUgugggguagggauauuaggccccaauuagaagauaaCUAUACAACUUACUACUUUCC
..(((((((((((((((((.((((((((((...........)))))).........)))).)))))))))))))))))..

Structure

gU                 U    ---------      aggg 
  GAGGUAGUAAGUUGUAU GUUg         uggggu    a
  ||||||||||||||||| ||||         ||||||    u
  UUUCAUCAUUCAACAUA Caau         accccg    a
CC                 U    agaagauua      gauu 

Annotation confidence High

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

X: 53287040-53287119 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mml-mir-98

Mature mml-miR-98-5p

• Accession: MIMAT0002404
• Description: Macaca mulatta mml-miR-98-5p mature miRNA
• Sequence: 2 - UGAGGUAGUAAGUUGUAUUGUU - 23
• Evidence: not_experimental

Mature mml-miR-98-3p

• Accession: MIMAT0051603
• Description: Macaca mulatta mml-miR-98-3p mature miRNA
• Sequence: 60 - CUAUACAACUUACUACUUUCC - 80
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24