miRBase entry: ptr-mir-98

Stem-loop ptr-mir-98


Accession
MI0002697
Description
Pan troglodytes ptr-mir-98 precursor miRNA
Gene family
MIPF0000002; let-7


Sequence

aggauucugcucaugccagggUGAGGUAGUAAGUUGUAUUGUUgugggguagggauauuaggccccaauuagaagauaacuauacaacuuacuacuuucccugguguguggcauauuca
.((((..((((((((((((((.(((((((((((((((((.((((((((((...........)))))).........)))).))))))))))))))))))))))))))).)))).)))).

Structure
a    uc    -          U                 U    ---------      aggg 
 ggau  ugcu caugccaggg GAGGUAGUAAGUUGUAU GUUg         uggggu    a
 ||||  |||| |||||||||| ||||||||||||||||| ||||         ||||||    u
 cuua  acgg gugugguccc uuucaucauucaacaua caau         accccg    a
a    -u    u          -                 u    agaagauua      gauu 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chrX: 53203082-53203200 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-98
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-98

Accession MIMAT0002405
Description Pan troglodytes ptr-miR-98 mature miRNA
Sequence 22 - UGAGGUAGUAAGUUGUAUUGUU - 43
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24