Stem-loop sequence ppy-mir-98

AccessionMI0002699 (change log)
DescriptionPongo pygmaeus miR-98 stem-loop
Gene family MIPF0000002; let-7
Stem-loop
   gu                 u    ---------      aggg 
5'   gagguaguaaguuguau guug         uggggu    a
     ||||||||||||||||| ||||         ||||||    u
3'   uuucaucauucaacaua caau         accccg    a
   cc                 u    agaagauua      gauu 
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Confidence Annotation confidence: not enough data
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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
Coordinates (P_pygmaeus_2.0.2; GCF_000001545.4) Overlapping transcripts
chrX: 53953964-53954043 [-]
intergenic
Clustered miRNAs
< 10kb from ppy-mir-98
ppy-let-7f-2chrX: 53954914-53954996 [-]
ppy-mir-98chrX: 53953964-53954043 [-]
Database links

Mature sequence ppy-miR-98

Accession MIMAT0002407
Sequence

2 - 

ugagguaguaaguuguauuguu

 - 23

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Evidence by similarity; MI0000100

References

1
PMID:15652478 "Phylogenetic shadowing and computational identification of human microRNA genes" Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E Cell. 120:21-24(2005).