miRBase entry: ptr-mir-99a

Stem-loop ptr-mir-99a


Accession
MI0002703
Description
Pan troglodytes ptr-mir-99a precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

cccauuggcauaAACCCGUAGAUCCGAUCUUGUGgugaaguggaccgcacaagcucgcuucuaugggucugugucagugug
..((((((((((.(((((((((..(((.((((((.((........)))))))).)))..))))))))).))))))))))..

Structure
cc          A         UC   U      g  aag 
  cauuggcaua ACCCGUAGA  CGA CUUGUG ug   u
  |||||||||| |||||||||  ||| |||||| ||    
  gugacugugu uggguaucu  gcu gaacac gc   g
gu          c         uc   c      -  cag 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr21: 2985749-2985829 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-99a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-99a

Accession MIMAT0002411
Description Pan troglodytes ptr-miR-99a mature miRNA
Sequence 13 - AACCCGUAGAUCCGAUCUUGUG - 34
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24