miRBase entry: ppy-mir-99a

Stem-loop ppy-mir-99a


Accession
MI0002705
Description
Pongo pygmaeus ppy-mir-99a precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

cccauuggcauaAACCCGUAGAUCCGAUCUUGUGguaaaguggaccgcacaagcucgcuucuaugggucugugucagugug
..((((((((((.(((((((((..(((.((((((.............)))))).)))..))))))))).))))))))))..

Structure
cc          A         UC   U      guaaa 
  cauuggcaua ACCCGUAGA  CGA CUUGUG     g
  |||||||||| |||||||||  ||| ||||||     u
  gugacugugu uggguaucu  gcu gaacac     g
gu          c         uc   c      gccag 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr21: 16252606-16252686 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppy-mir-99a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-miR-99a

Accession MIMAT0002413
Description Pongo pygmaeus ppy-miR-99a mature miRNA
Sequence 13 - AACCCGUAGAUCCGAUCUUGUG - 34
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24