miRBase entry: ppa-mir-99a

Stem-loop ppa-mir-99a

Accession

MI0002708

Description

Pan paniscus ppa-mir-99a precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

cccauuggcauaAACCCGUAGAUCCGAUCUUGUGgugaaguggaccgcacaagcucgcuucuaugggucugugucagugug
..((((((((((.(((((((((..(((.((((((.((........)))))))).)))..))))))))).))))))))))..

Structure

cc          A         UC   U      g  aag 
  cauuggcaua ACCCGUAGA  CGA CUUGUG ug   u
  |||||||||| |||||||||  ||| |||||| ||    
  gugacugugu uggguaucu  gcu gaacac gc   g
gu          c         uc   c      -  cag

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr21: 16645662-16645742 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppa-mir-99a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppa-miR-99a

Accession	MIMAT0002416
Description	Pan paniscus ppa-miR-99a mature miRNA
Sequence	13 - AACCCGUAGAUCCGAUCUUGUG - 34
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24