miRBase entry: ptr-mir-100

Stem-loop ptr-mir-100


Accession
MI0002713
Description
Pan troglodytes ptr-mir-100 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

ccuguugccacaAACCCGUAGAUCCGAACUUGUGguauuaguccgcacaagcuuguaucuauagguaugugucuguuagg
((((....((((.(((.((((((.(((.((((((...........)))))).))).)))))).))).)))).....))))

Structure
    -uugc    A   C      C   A      guau 
ccug     caca ACC GUAGAU CGA CUUGUG    u
||||     |||| ||| |||||| ||| ||||||    a
ggau     gugu ugg uaucua guu gaacac    g
    ugucu    a   a      u   c      gccu 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr11: 122647706-122647785 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-100
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-100

Accession MIMAT0002421
Description Pan troglodytes ptr-miR-100 mature miRNA
Sequence 13 - AACCCGUAGAUCCGAACUUGUG - 34
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24