miRBase entry: sla-mir-100

Stem-loop sla-mir-100


Accession
MI0002715
Description
Saguinus labiatus sla-mir-100 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

ccuguugccacaAACCCGUAGAUCCGAACUUGUGguguuaaugugcacaagcuugugucuauagguaugugucuguuagg
((((....((((.(((.((((((.(((.((((((...........)))))).))).)))))).))).)))).....))))

Structure
    -uugc    A   C      C   A      gugu 
ccug     caca ACC GUAGAU CGA CUUGUG    u
||||     |||| ||| |||||| ||| ||||||    a
ggau     gugu ugg uaucug guu gaacac    a
    ugucu    a   a      u   c      gugu 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
Unknown

Database links

Mature sla-miR-100

Accession MIMAT0002423
Description Saguinus labiatus sla-miR-100 mature miRNA
Sequence 13 - AACCCGUAGAUCCGAACUUGUG - 34
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24