miRBase entry: ptr-mir-29b-1

Stem-loop ptr-mir-29b-1


Accession
MI0002727
Description
Pan troglodytes ptr-mir-29b-1 precursor miRNA
Gene family
MIPF0000009; mir-29


Sequence

cuucaggaagcugguuucauauggugguuuagauuuaaauagugauugucUAGCACCAUUUGAAAUCAGUguucuuggggg
(((((((((((((((((((.((((((..((((((.............)))))))))))).)))))))))).))))))))).

Structure
-         -          u      gu      uuaaa 
 cuucaggaa gcugguuuca auggug  uuagau     u
 ||||||||| |||||||||| ||||||  ||||||     a
 gggguucuu UGACUAAAGU UACCAC  GAUcug     g
g         g          U      --      uuagu 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr7: 135425101-135425181 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-29b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-29b

Accession MIMAT0002435
Description Pan troglodytes ptr-miR-29b mature miRNA
Sequence 51 - UAGCACCAUUUGAAAUCAGU - 70
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24