miRBase entry: ptr-mir-103-1

Stem-loop ptr-mir-103-1


Accession
MI0002742
Description
Pan troglodytes ptr-mir-103-1 precursor miRNA
Gene family
MIPF0000024; mir-103

Literature search
1 open access papers mention ptr-mir-103-1
(1 sentences)

Sequence

uacugcccucggcuucuuuacagugcugccuuguugcauauggaucaAGCAGCAUUGUACAGGGCUAUGAaggcauug
...((((.((((((.((.(((((((((((.(((.(.(....).).)))))))))))))).))))))..)).))))...

Structure
uac    c  --    u  u           c   u g a 
   ugcc uc  ggcu cu uacagugcugc uug u c u
   |||| ||  |||| || ||||||||||| ||| | |  
   acgg AG  UCGG GA AUGUUACGACG Aac a g a
guu    a  UA    -  C           -   u g u 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr5: 169084206-169084283 [-]

Database links

Mature ptr-miR-103

Accession MIMAT0002446
Description Pan troglodytes ptr-miR-103 mature miRNA
Sequence 48 - AGCAGCAUUGUACAGGGCUAUGA - 70
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24