miRBase entry: ggo-mir-105

Stem-loop ggo-mir-105

Accession

MI0002747

Description

Gorilla gorilla ggo-mir-105 precursor miRNA

Gene family

MIPF0000074; mir-105

Sequence

ugugcaucguggUCAAAUGCUCAGACUCCUGUgguggcugcucaugcaccacggauguuugagcaugugcuacggugucua
...(((((((((.((.((((((((((..((((((((..........))))))))..)))))))))).)))))))))))...

Structure

ugu         U  A          UC        gcug 
   gcaucgugg CA AUGCUCAGAC  CUGUggug    c
   ||||||||| || ||||||||||  ||||||||     
   uguggcauc gu uacgaguuug  ggcaccac    u
auc         -  g          ua        guac

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chrX: 152654612-152654692 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ggo-mir-105

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-105

Accession	MIMAT0002451
Description	Gorilla gorilla ggo-miR-105 mature miRNA
Sequence	13 - UCAAAUGCUCAGACUCCUGU - 32
Evidence	experimental Illumina [2]

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24

PubMed ID: 22453055
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
"Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
"BMC Genomics (2012) 13:116