miRBase entry: ptr-mir-105

Stem-loop ptr-mir-105


Accession
MI0002749
Description
Pan troglodytes ptr-mir-105 precursor miRNA
Gene family
MIPF0000074; mir-105


Sequence

ugugcaucguggUCAAAUGCUCAGACUCCUGUgguggcugcuuaugcaccacggauguuugagcaugugcuauggugucua
...(((((((((.((.((((((((((..((((((((..........))))))))..)))))))))).)))))))))))...

Structure
ugu         U  A          UC        gcug 
   gcaucgugg CA AUGCUCAGAC  CUGUggug    c
   ||||||||| || ||||||||||  ||||||||     
   ugugguauc gu uacgaguuug  ggcaccac    u
auc         -  g          ua        guau 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chrX: 152097904-152097984 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-105
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-105

Accession MIMAT0002453
Description Pan troglodytes ptr-miR-105 mature miRNA
Sequence 13 - UCAAAUGCUCAGACUCCUGU - 32
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24