miRBase entry: mml-mir-107

Stem-loop mml-mir-107


Accession
MI0002754
Description
Macaca mulatta mml-mir-107 precursor miRNA
Gene family
MIPF0000024; mir-103

Literature search
1 open access papers mention mml-mir-107
(1 sentences)

Sequence

12445 reads, 94 reads per million, 9 experiments
cucucugcuuucAGCUUCUUUACAGUGUUGCCUUGuggcauggaguucaAGCAGCAUUGUACAGGGCUAUCAaagcacaga
.(((.((((((.((((.((.(((((((((((.(((.(((.....))))))))))))))))).))))))...)))))).)))

Structure
c   c      --c    U  U           C   u   a 
 ucu ugcuuu   AGCU CU UACAGUGUUGC UUG ggc u
 ||| ||||||   |||| || ||||||||||| ||| ||| g
 aga acgaaA   UCGG GA AUGUUACGACG Aac uug g
-   c      CUA    -  C           -   -   a 


Annotation confidence High
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr9: 84746619-84746699 [-]

Database links

Mature mml-miR-107-3p

Accession MIMAT0002458
Description Macaca mulatta mml-miR-107-3p mature miRNA
Sequence 50 - AGCAGCAUUGUACAGGGCUAUCA - 72
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature mml-miR-107-5p

Accession MIMAT0026584
Description Macaca mulatta mml-miR-107-5p mature miRNA
Sequence 13 - AGCUUCUUUACAGUGUUGCCUUG - 35
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45