miRBase entry: ptr-mir-147a

Stem-loop ptr-mir-147a


Accession
MI0002770
Description
Pan troglodytes ptr-mir-147a precursor miRNA
Gene family
MIPF0000105; mir-147


Sequence

aaucuaaagaaaacauuucugcacacacaccagacuauggaagccaGUGUGUGGAAAUGCUUCUGCuagauu
((((((.((((..(((((((((((((...(((.....)))......))))))))))))).))))..))))))

Structure
      -a    aa             ---aca   g 
aaucua  agaa  cauuucugcacac      cca a
||||||  ||||  |||||||||||||      ||| c
uuagau  UCUU  GUAAAGGUGUGUG      ggu u
      CG    -C             accgaa   a 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr9: 98292860-98292931 [-]

Database links

Mature ptr-miR-147a

Accession MIMAT0002474
Description Pan troglodytes ptr-miR-147a mature miRNA
Sequence 47 - GUGUGUGGAAAUGCUUCUGC - 66
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24