miRBase entry: ptr-mir-7-3

Stem-loop ptr-mir-7-3


Accession
MI0002785
Description
Pan troglodytes ptr-mir-7-3 precursor miRNA
Gene family
MIPF0000022; mir-7


Sequence

agauuagaguggcuguggucuagugcugugUGGAAGACUAGUGAUUUUGUUGUucugauguacuacgacaacaagucacagccggccucauagcgcagacucccuucgac
......(((.((....(((((.((((((((.((..(.((.(((((((.((((((.((......)).))))))))))))))).)..)).))))))))))))))).)))...

Structure
agauua   u  cugu     a        U  AA A  A       U      c  au 
      gag gg    ggucu gugcugug GG  G CU GUGAUUU GUUGUu ug  g
      ||| ||    ||||| |||||||| ||  | || ||||||| |||||| ||   
      cuu cc    ucaga cgcgauac cc  c ga cacugaa caacag au  u
---cag   c  ----     -        u  gg c  -       -      c  ca 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr19: 4968478-4968587 [+]

Database links

Mature ptr-miR-7

Accession MIMAT0002485
Description Pan troglodytes ptr-miR-7 mature miRNA
Sequence 31 - UGGAAGACUAGUGAUUUUGUUGU - 53
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24