miRBase entry: ggo-mir-10b

Stem-loop ggo-mir-10b


Accession
MI0002793
Description
Gorilla gorilla ggo-mir-10b precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
1 open access papers mention ggo-mir-10b
(7 sentences)

Sequence

ccagacauuguaacguugucuauauaUACCCUGUAGAACCGAAUUUGUgugguauccauauagucacagauucgauucuaggggaauauauggucgaugcaaaaacuuca
.............(((((.((((((((.((((.(((((.((((((((((.(.(((....))).))))))))))).))))))))).)))))))).)))))...........

Structure
ccagacauuguaa     u        A    G     C          u g   c 
             cguug cuauauaU CCCU UAGAA CGAAUUUGUg g uau c
             ||||| |||||||| |||| ||||| |||||||||| | |||  
             guagc gguauaua gggg aucuu gcuuagacac u aua a
--acuucaaaaac     u        a    -     a          - g   u 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr2B: 68564274-68564383 [+]

Database links

Mature ggo-miR-10b

Accession MIMAT0002491
Description Gorilla gorilla ggo-miR-10b mature miRNA
Sequence 27 - UACCCUGUAGAACCGAAUUUGU - 48
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24