miRBase entry: ptr-mir-181a-2

Stem-loop ptr-mir-181a-2


Accession
MI0002807
Description
Pan troglodytes ptr-mir-181a-2 precursor miRNA
Gene family
MIPF0000007; mir-181


Sequence

agaagggcuaucaggccagccuucagaggacuccaaggAACAUUCAACGCUGUCGGUGAGUuugggauuugaaaaaaccacugaccguugacuguaccuugggguccuua
.((((((((....)))...))))).(((((((((((((.(((.((((((..(((((((.((((...........))))))))))))))))).))).))))))))))))).

Structure
agaagggcuaucaggccagccuuca             A   U      CU       A    ggga 
                         gaggacuccaagg ACA UCAACG  GUCGGUG GUuu    u
                         ||||||||||||| ||| ||||||  ||||||| ||||    u
                         uuccugggguucc ugu aguugc  cagucac caaa    u
------------------------a             a   c      --       -    aaag 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr9: 102766897-102767006 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-181a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-181a-5p

Accession MIMAT0002505
Description Pan troglodytes ptr-miR-181a-5p mature miRNA
Sequence 39 - AACAUUCAACGCUGUCGGUGAGU - 61
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24