miRBase entry: ptr-mir-181c

Stem-loop ptr-mir-181c


Accession
MI0002812
Description
Pan troglodytes ptr-mir-181c precursor miRNA
Gene family
MIPF0000007; mir-181


Sequence

cggaaaauuugccaaggguuugggggAACAUUCAACCUGUCGGUGAGUuugggcagcucaggcaaaccaucgaccguugaguggacccugaggccuggaauugccauccu
.(((.......(((..(((((.((((..((((((((..(((((((.(((((...........)))))))))))).))))))))..)))).))))))))........))).

Structure
c   -aaauuug   ag     g    AA        CU       A     ggca 
 gga        cca  gguuu gggg  CAUUCAAC  GUCGGUG GUuug    g
 |||        |||  ||||| ||||  ||||||||  ||||||| |||||    c
 ccu        ggu  ccgga uccc  gugaguug  cagcuac caaac    u
u   accguuaa   --     g    ag        -c       -     ggac 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr19: 14620816-14620925 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-181c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-181c

Accession MIMAT0002510
Description Pan troglodytes ptr-miR-181c mature miRNA
Sequence 27 - AACAUUCAACCUGUCGGUGAGU - 48
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24