miRBase entry: ptr-mir-196a-2

Stem-loop ptr-mir-196a-2


Accession
MI0002824
Description
Pan troglodytes ptr-mir-196a-2 precursor miRNA
Gene family
MIPF0000031; mir-196


Sequence

ugcucgcucagcugaucuguggcuUAGGUAGUUUCAUGUUGUUGGGauugaguuuugaacucggcaacaagaaacugccugaguuacaucagucgguuuucgucgagggc
..(((((..(((((((.((((((((((((((((((.((((((((((.((........)))))))))))).))))))))))))))))))...)))))))...).))))...

Structure
-ug    - -uc       --c                  A          a  gag 
   cucg c   agcugau   uguggcuUAGGUAGUUUC UGUUGUUGGG uu   u
   |||| |   |||||||   |||||||||||||||||| |||||||||| ||    
   gagc g   uuggcug   acauugaguccgucaaag acaacggcuc aa   u
cgg    u cuu       acu                  a          -  guu 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr12: 35785465-35785574 [-]

Database links

Mature ptr-miR-196a

Accession MIMAT0002522
Description Pan troglodytes ptr-miR-196a mature miRNA
Sequence 25 - UAGGUAGUUUCAUGUUGUUGGG - 46
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24