miRBase entry: age-mir-196

Stem-loop age-mir-196


Accession
MI0002828
Description
Ateles geoffroyi age-mir-196 precursor miRNA
Gene family
MIPF0000031; mir-196


Sequence

ugcuugcucagcugaucuguggcuUAGGUAGUUUCAUGUUGUUGGGauugaguuuugaacucggcaacaagaaacugccugaguuacaucagucgguuuucgucgagggg
(.(((((..(((((((.((((((((((((((((((.((((((((((.((........)))))))))))).))))))))))))))))))...)))))))...).)))).).

Structure
- g    - -uc       --c                  A          a  gag 
 u cuug c   agcugau   uguggcuUAGGUAGUUUC UGUUGUUGGG uu   u
 | |||| |   |||||||   |||||||||||||||||| |||||||||| ||    
 g gagc g   uuggcug   acauugaguccgucaaag acaacggcuc aa   u
g g    u cuu       acu                  a          -  guu 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
Unknown

Database links

Mature age-miR-196

Accession MIMAT0002525
Description Ateles geoffroyi age-miR-196 mature miRNA
Sequence 25 - UAGGUAGUUUCAUGUUGUUGGG - 46
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24