miRBase entry: ppy-mir-199a

Stem-loop ppy-mir-199a

Accession

MI0002832

Description

Pongo pygmaeus ppy-mir-199a precursor miRNA

Gene family

MIPF0000040; mir-199

Sequence

aggaagcuucuggagauccugcuccgucgcCCCAGUGUUCAGACUACCUGUUCaggacaaugccguuguacaguagucugcacauugguuagacugggcaagggagagca
.....(((.((.....((((((((.(((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).)))).))))))))).

Structure

aggaa   u  ggaga    -    c   gcC       U        C   U  --  ac 
     gcu cu     uccu gcuc guc   CCAGUGU CAGACUAC UGU Ca  gg  a
     ||| ||     |||| |||| |||   ||||||| |||||||| ||| ||  ||   
     cga ga     ggga cggg cag   gguuaca gucugaug aca gu  cc  a
----a   -  -----    a    u   auu       c        -   u  ug  gu

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr1: 78924227-78924336 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-199a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-199a

Accession	MIMAT0002529
Description	Pongo pygmaeus ppy-miR-199a mature miRNA
Sequence	31 - CCCAGUGUUCAGACUACCUGUUC - 53
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24