miRBase entry: ptr-mir-199a-2

Stem-loop ptr-mir-199a-2


Accession
MI0002833
Description
Pan troglodytes ptr-mir-199a-2 precursor miRNA
Gene family
MIPF0000040; mir-199

Literature search
2 open access papers mention ptr-mir-199a-2
(5 sentences)

Sequence

aggaagcuucuggagauccugcuccgucgcCCCAGUGUUCAGACUACCUGUUCaggacaaugccguuguacaguagucugcacauugguuagacugggcaagggagagca
.....(((.((.....((((((((.(((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).)))).))))))))).

Structure
aggaa   u  ggaga    -    c   gcC       U        C   U  --  ac 
     gcu cu     uccu gcuc guc   CCAGUGU CAGACUAC UGU Ca  gg  a
     ||| ||     |||| |||| |||   ||||||| |||||||| ||| ||  ||   
     cga ga     ggga cggg cag   gguuaca gucugaug aca gu  cc  a
----a   -  -----    a    u   auu       c        -   u  ug  gu 


Annotation confidence Not enough data
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Comments
Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context
chr1: 150507742-150507851 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-199a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-199a-5p

Accession MIMAT0002530
Description Pan troglodytes ptr-miR-199a-5p mature miRNA
Sequence 31 - CCCAGUGUUCAGACUACCUGUUC - 53
Evidence not_experimental

References

  1. PubMed ID: 15652478
    Phylogenetic shadowing and computational identification of human microRNA genes
    "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
    "Cell (2005) 120:21-24