Stem-loop ppa-mir-204

Accession

MI0002843

Description

Pan paniscus ppa-mir-204 precursor miRNA

Gene family

MIPF0000042; mir-204

Sequence

ggcuacagucuuucuucaugugacucguggacUUCCCUUUGUCAUCCUAUGCCUgagaauauaugaaggaggcugggaaggcaaagggacguucaauugucaucacuggc
.....((((..........(((((...(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))...))))).))))..

Structure

ggcua    cuuucuucau     ucg     U          A     U    gagaau 
     cagu          gugac   uggac UCCCUUUGUC UCCUA GCCU      a
     ||||          |||||   ||||| |||||||||| ||||| ||||      u
     guca          uacug   acuug agggaaacgg agggu cgga      a
---cg    ---------c     uua     c          a     -    ggaagu 

Annotation confidence Not enough data

Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr9: 69546983-69547092 [-]

Mature ppa-miR-204

• Accession: MIMAT0002540
• Description: Pan paniscus ppa-miR-204 mature miRNA
• Sequence: 33 - UUCCCUUUGUCAUCCUAUGCCU - 54
• Evidence: not_experimental

References

1. PubMed ID: 15652478
   Phylogenetic shadowing and computational identification of human microRNA genes
   "Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
   "Cell (2005) 120:21-24